IL_7OT5_133

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7OT5|1|2|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OT5_133 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0742

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OT5|1|2|G|446
7OT5|1|2|G|447
7OT5|1|2|A|448
7OT5|1|2|G|449
7OT5|1|2|G|450
*
7OT5|1|2|C|483
7OT5|1|2|G|484
7OT5|1|2|U|485
7OT5|1|2|U|486
7OT5|1|2|A|487
7OT5|1|2|C|488

Current chains

Chain 2

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain t

30S ribosomal protein S16