IL_7OTC_009

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_009 not in the Motif Atlas

Geometric match to IL_4V9F_011

Geometric discrepancy: 0.3455

The information below is about IL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7OTC|1|A|C|274
7OTC|1|A|C|275
7OTC|1|A|U|276
7OTC|1|A|G|277
7OTC|1|A|A|278
7OTC|1|A|A|279
7OTC|1|A|U|280
7OTC|1|A|C|281
*
7OTC|1|A|G|359
7OTC|1|A|U|360
7OTC|1|A|G|361
7OTC|1|A|A|362
7OTC|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains