IL_7OTC_051

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

7OTC|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_051 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.0951

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7OTC|1|A|C|1417
7OTC|1|A|G|1418
7OTC|1|A|A|1419
7OTC|1|A|A|1420
7OTC|1|A|G|1421
*
7OTC|1|A|C|1577
7OTC|1|A|U|1578
7OTC|1|A|A|1579
7OTC|1|A|A|1580
7OTC|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains