IL_7OTC_065

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7OTC|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_065 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.102

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OTC|1|A|U|1712
7OTC|1|A|A|1713
7OTC|1|A|U|1714
7OTC|1|A|G|1715
7OTC|1|A|U|1716
7OTC|1|A|A|1717
7OTC|1|A|G|1718
*
7OTC|1|A|U|1742
7OTC|1|A|G|1743
7OTC|1|A|A|1744
7OTC|1|A|A|1745
7OTC|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains