IL_7OTC_142
3D structure
- PDB id
- 7OTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 7OTC|1|a|A|532, 7OTC|1|a|U|534, 7OTC|1|a|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OTC_142 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.088
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OTC|1|a|G|515
7OTC|1|a|PSU|516
7OTC|1|a|G|517
7OTC|1|a|C|518
7OTC|1|a|C|519
7OTC|1|a|A|520
7OTC|1|a|G|521
*
7OTC|1|a|C|528
7OTC|1|a|G|529
7OTC|1|a|G|530
7OTC|1|a|U|531
7OTC|1|a|A|532
7OTC|1|a|A|533
7OTC|1|a|U|534
7OTC|1|a|A|535
7OTC|1|a|C|536
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
- Chain w
- Elongation factor G
Coloring options: