IL_7OTC_182

3D structure

PDB id

7OTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with elongation factor G and the antibiotic Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

7OTC|1|A|U|846, 7OTC|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OTC_182 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.4253

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7OTC|1|A|A|844
7OTC|1|A|A|845
7OTC|1|A|U|846
7OTC|1|A|U|847
7OTC|1|A|C|848
*
7OTC|1|A|G|930
7OTC|1|A|U|931
7OTC|1|A|U|932
7OTC|1|A|A|933
7OTC|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30