IL_7P2E_003

3D structure

PDB id

7P2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AA*UAU

Length

5 nucleotides

Bulged bases

7P2E|1|A|A|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P2E_003 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.246

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7P2E|1|A|A|685
7P2E|1|A|A|686
*
7P2E|1|A|U|859
7P2E|1|A|A|860
7P2E|1|A|U|861

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain M

28S ribosomal protein S16, mitochondrial

Chain T

28S ribosomal protein S25, mitochondrial