IL_7P2E_041

3D structure

PDB id

7P2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome small subunit in complex with IF3, GMPPMP and streptomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P2E_041 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1598

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7P2E|1|A|G|1489
7P2E|1|A|U|1490
7P2E|1|A|C|1491||A
*
7P2E|1|A|G|1559||A
7P2E|1|A|U|1560
7P2E|1|A|C|1561

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 8

Translation initiation factor IF-3, mitochondrial