IL_7P3K_019

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P3K_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.166

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7P3K|1|A|U|409
7P3K|1|A|G|410
7P3K|1|A|A|411
7P3K|1|A|A|412
7P3K|1|A|G|413
7P3K|1|A|A|414
7P3K|1|A|A|415
7P3K|1|A|G|416
*
7P3K|1|A|U|427
7P3K|1|A|G|428
7P3K|1|A|U|429
7P3K|1|A|A|430
7P3K|1|A|A|431
7P3K|1|A|A|432
7P3K|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4