IL_7P3K_093

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P3K_093 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1842

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7P3K|1|a|G|875
7P3K|1|a|C|876
7P3K|1|a|A|877
7P3K|1|a|A|878
7P3K|1|a|G|879
*
7P3K|1|a|C|898
7P3K|1|a|A|899
7P3K|1|a|A|900
7P3K|1|a|C|901
7P3K|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16