IL_7P3K_126

3D structure

PDB id

7P3K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7P3K|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P3K_126 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0789

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7P3K|1|a|C|1686
7P3K|1|a|G|1687
7P3K|1|a|U|1688
7P3K|1|a|A|1689
7P3K|1|a|A|1690
7P3K|1|a|C|1691
*
7P3K|1|a|G|1696
7P3K|1|a|G|1697
7P3K|1|a|A|1698
7P3K|1|a|G|1699
7P3K|1|a|A|1700
7P3K|1|a|A|1701
7P3K|1|a|G|1702

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2