IL_7P48_025

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UA*UUA

Length

5 nucleotides

Bulged bases

7P48|1|A|U|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_025 not in the Motif Atlas

Homologous match to IL_4WF9_030

Geometric discrepancy: 0.358

The information below is about IL_4WF9_030

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

7P48|1|A|U|896
7P48|1|A|A|897
*
7P48|1|A|U|970
7P48|1|A|U|971
7P48|1|A|A|972

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

LSU ribosomal protein L27P

Chain X

50S ribosomal protein L30