IL_7P48_050

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAG*UGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_050 not in the Motif Atlas

Homologous match to IL_7A0S_056

Geometric discrepancy: 0.3302

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

7P48|1|A|G|1518
7P48|1|A|U|1519
7P48|1|A|A|1520
7P48|1|A|A|1521
7P48|1|A|G|1522
*
7P48|1|A|U|1558
7P48|1|A|G|1559
7P48|1|A|A|1560
7P48|1|A|G|1561
7P48|1|A|C|1562

Current chains

Chain A

23S rRNA

Nearby chains