IL_7P48_057

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7P48|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_057 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1037

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7P48|1|A|C|1730
7P48|1|A|G|1731
7P48|1|A|U|1732
7P48|1|A|A|1733
7P48|1|A|A|1734
7P48|1|A|C|1735
*
7P48|1|A|G|1740
7P48|1|A|G|1741
7P48|1|A|A|1742
7P48|1|A|G|1743
7P48|1|A|A|1744
7P48|1|A|A|1745
7P48|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA