IL_7P48_080

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_080 not in the Motif Atlas

Homologous match to IL_7RQB_094

Geometric discrepancy: 0.0756

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7P48|1|A|A|2486
7P48|1|A|U|2487
7P48|1|A|C|2488
*
7P48|1|A|G|2516
7P48|1|A|G|2517
7P48|1|A|U|2518
7P48|1|A|U|2519
7P48|1|A|U|2520

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

ABC-F type ribosomal protection protein

Chain K

50S ribosomal protein L16