IL_7P48_126

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GU*GUC

Length

5 nucleotides

Bulged bases

7P48|1|a|U|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_126 not in the Motif Atlas

Geometric match to IL_5TBW_146

Geometric discrepancy: 0.2174

The information below is about IL_5TBW_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7P48|1|a|G|612
7P48|1|a|U|613
*
7P48|1|a|G|640
7P48|1|a|U|641
7P48|1|a|C|642

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17