IL_7P48_178

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAA*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P48_178 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.1551

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7P48|1|a|C|1269
7P48|1|a|G|1270
7P48|1|a|A|1271
7P48|1|a|A|1272
7P48|1|a|A|1273
*
7P48|1|a|U|1282
7P48|1|a|C|1283
7P48|1|a|A|1284
7P48|1|a|A|1285
7P48|1|a|G|1286

Current chains

Chain a

16S rRNA

Nearby chains