IL_7P7Q_031
3D structure
- PDB id
- 7P7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7P7Q_031 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.081
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_94128.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7P7Q|1|A|G|896
7P7Q|1|A|A|897
7P7Q|1|A|G|898
7P7Q|1|A|G|899
7P7Q|1|A|U|900
7P7Q|1|A|A|901
7P7Q|1|A|G|902
*
7P7Q|1|A|C|955
7P7Q|1|A|G|956
7P7Q|1|A|A|957
7P7Q|1|A|A|958
7P7Q|1|A|U|959
7P7Q|1|A|G|960
7P7Q|1|A|C|961
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain P
- 50S ribosomal protein L16
- Chain Y
- 50S ribosomal protein L27
Coloring options: