IL_7P7Q_103

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

7P7Q|1|A|A|2555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_103 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.0496

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

7P7Q|1|A|U|2535
7P7Q|1|A|G|2536
*
7P7Q|1|A|C|2553
7P7Q|1|A|A|2554
7P7Q|1|A|A|2555
7P7Q|1|A|G|2556

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain M

50S ribosomal protein L13