IL_7P7Q_178

3D structure

PDB id

7P7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7P7Q_178 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0774

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7P7Q|1|a|A|1442
7P7Q|1|a|G|1443
7P7Q|1|a|A|1444
7P7Q|1|a|G|1445
*
7P7Q|1|a|U|1508
7P7Q|1|a|G|1509
7P7Q|1|a|A|1510
7P7Q|1|a|U|1511

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA