IL_7PD3_011

3D structure

PDB id

7PD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

7PD3|1|A|A|1974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PD3_011 not in the Motif Atlas

Geometric match to IL_5J7L_261

Geometric discrepancy: 0.1615

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7PD3|1|A|A|1929
7PD3|1|A|C|1930
*
7PD3|1|A|G|1973
7PD3|1|A|A|1974
7PD3|1|A|U|1975

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial