IL_7PD3_050

3D structure

PDB id

7PD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PD3_050 not in the Motif Atlas

Geometric match to IL_9DFE_348

Geometric discrepancy: 0.3216

The information below is about IL_9DFE_348

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

7PD3|1|A|U|2744
7PD3|1|A|A|2745
7PD3|1|A|U|2746
*
7PD3|1|A|A|2802
7PD3|1|A|A|2803

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

39S ribosomal protein L28, mitochondrial

Chain x

5-methylcytosine rRNA methyltransferase NSUN4

Chain y

Transcription termination factor 4, mitochondrial