IL_7PJS_029
3D structure
- PDB id
- 7PJS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PJS_029 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.2258
- The information below is about IL_5J7L_274
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7PJS|1|A|G|875
7PJS|1|A|C|876
7PJS|1|A|A|877
7PJS|1|A|A|878
7PJS|1|A|G|879
*
7PJS|1|A|C|898
7PJS|1|A|A|899
7PJS|1|A|A|900
7PJS|1|A|C|901
7PJS|1|A|C|902
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L16
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