IL_7PJS_049

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

7PJS|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_049 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0783

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7PJS|1|A|C|1417
7PJS|1|A|G|1418
7PJS|1|A|A|1419
7PJS|1|A|A|1420
7PJS|1|A|G|1421
*
7PJS|1|A|C|1577
7PJS|1|A|U|1578
7PJS|1|A|A|1579
7PJS|1|A|A|1580
7PJS|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains