IL_7PJS_121

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_121 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.0809

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

7PJS|1|a|C|132
7PJS|1|a|U|133
7PJS|1|a|G|134
7PJS|1|a|C|135
7PJS|1|a|C|136
*
7PJS|1|a|G|227
7PJS|1|a|A|228
7PJS|1|a|U|229
7PJS|1|a|G|230

Current chains

Chain a

16S ribosomal RNA

Nearby chains