IL_7PJS_127

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

7PJS|1|a|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_127 not in the Motif Atlas

Homologous match to IL_5J7L_017

Geometric discrepancy: 0.099

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7PJS|1|a|U|367
7PJS|1|a|U|368
7PJS|1|a|G|369
*
7PJS|1|a|C|392
7PJS|1|a|A|393

Current chains

Chain a

16S ribosomal RNA

Nearby chains