IL_7PJS_130

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_130 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.076

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7PJS|1|a|U|409
7PJS|1|a|G|410
7PJS|1|a|A|411
7PJS|1|a|A|412
7PJS|1|a|G|413
7PJS|1|a|A|414
7PJS|1|a|A|415
7PJS|1|a|G|416
*
7PJS|1|a|U|427
7PJS|1|a|G|428
7PJS|1|a|U|429
7PJS|1|a|A|430
7PJS|1|a|A|431
7PJS|1|a|A|432
7PJS|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains