IL_7PJS_132

3D structure

PDB id

7PJS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7PJS|1|a|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJS_132 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.0758

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7PJS|1|a|G|446
7PJS|1|a|G|447
7PJS|1|a|A|448
7PJS|1|a|G|449
7PJS|1|a|G|450
*
7PJS|1|a|C|483
7PJS|1|a|G|484
7PJS|1|a|U|485
7PJS|1|a|U|486
7PJS|1|a|A|487
7PJS|1|a|C|488

Current chains

Chain a

16S ribosomal RNA

Nearby chains