3D structure

PDB id
7PJS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.35 Å

Loop

Sequence
AAG*CUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJS_151 not in the Motif Atlas
Geometric match to IL_3D0M_002
Geometric discrepancy: 0.1741
The information below is about IL_3D0M_002
Detailed Annotation
Isolated cWH basepair
Broad Annotation
No text annotation
Motif group
IL_10167.2
Basepair signature
cWW-cHW-cWW
Number of instances in this motif group
51

Unit IDs

7PJS|1|a|A|460
7PJS|1|a|A|461
7PJS|1|a|G|462
*
7PJS|1|a|C|470
7PJS|1|a|U|471
7PJS|1|a|U|472

Current chains

Chain a
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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