3D structure

PDB id
7PJT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)
Experimental method
ELECTRON MICROSCOPY
Resolution
6 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
7PJT|1|A|A|504, 7PJT|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJT_010 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.179
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7PJT|1|A|G|481
7PJT|1|A|A|482
7PJT|1|A|A|483
7PJT|1|A|C|484
*
7PJT|1|A|G|496
7PJT|1|A|A|497
7PJT|1|A|G|498
7PJT|1|A|U|499
7PJT|1|A|G|500
7PJT|1|A|A|501
7PJT|1|A|A|502
7PJT|1|A|A|503
7PJT|1|A|A|504
7PJT|1|A|A|505
7PJT|1|A|G|506
7PJT|1|A|A|507
7PJT|1|A|A|508
7PJT|1|A|C|509

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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