IL_7PJT_064

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7PJT|1|A|A|1801, 7PJT|1|A|C|1816, 7PJT|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJT_064 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1995

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7PJT|1|A|U|1798
7PJT|1|A|G|1799
7PJT|1|A|C|1800
7PJT|1|A|A|1801
7PJT|1|A|A|1802
7PJT|1|A|A|1803
7PJT|1|A|C|1804
*
7PJT|1|A|G|1813
7PJT|1|A|G|1814
7PJT|1|A|A|1815
7PJT|1|A|C|1816
7PJT|1|A|G|1817
7PJT|1|A|U|1818
7PJT|1|A|A|1819
7PJT|1|A|U|1820
7PJT|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA