IL_7PJT_178

3D structure

PDB id

7PJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with tRNAs in hybrid state 1 (H1)

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGAAGG*UCUAAG

Length

12 nucleotides

Bulged bases

7PJT|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJT_178 not in the Motif Atlas

Homologous match to IL_7A0S_108

Geometric discrepancy: 0.4325

The information below is about IL_7A0S_108

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7PJT|1|A|C|1417
7PJT|1|A|G|1418
7PJT|1|A|A|1419
7PJT|1|A|A|1420
7PJT|1|A|G|1421
7PJT|1|A|G|1422
*
7PJT|1|A|U|1576
7PJT|1|A|C|1577
7PJT|1|A|U|1578
7PJT|1|A|A|1579
7PJT|1|A|A|1580
7PJT|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains