3D structure

PDB id
7PJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with tRNAs in hybrid state 2 (H2)
Experimental method
ELECTRON MICROSCOPY
Resolution
9.5 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
7PJU|1|A|A|504, 7PJU|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJU_011 not in the Motif Atlas
Geometric match to IL_5J7L_255
Geometric discrepancy: 0.1099
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

7PJU|1|A|G|481
7PJU|1|A|A|482
7PJU|1|A|A|483
7PJU|1|A|C|484
*
7PJU|1|A|G|496
7PJU|1|A|A|497
7PJU|1|A|G|498
7PJU|1|A|U|499
7PJU|1|A|G|500
7PJU|1|A|A|501
7PJU|1|A|A|502
7PJU|1|A|A|503
7PJU|1|A|A|504
7PJU|1|A|A|505
7PJU|1|A|G|506
7PJU|1|A|A|507
7PJU|1|A|A|508
7PJU|1|A|C|509

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain S
Ribosomal protein L22
Chain U
Ribosomal protein L24

Coloring options:


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