IL_7PJV_130

3D structure

PDB id

7PJV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJV_130 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0986

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7PJV|1|a|U|409
7PJV|1|a|G|410
7PJV|1|a|A|411
7PJV|1|a|A|412
7PJV|1|a|G|413
7PJV|1|a|A|414
7PJV|1|a|A|415
7PJV|1|a|G|416
*
7PJV|1|a|U|427
7PJV|1|a|G|428
7PJV|1|a|U|429
7PJV|1|a|A|430
7PJV|1|a|A|431
7PJV|1|a|A|432
7PJV|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4