IL_7PJW_168

3D structure

PDB id

7PJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCG(4OC)CC*G(UR3)AACAAG

Length

14 nucleotides

Bulged bases

7PJW|1|a|C|1400, 7PJW|1|a|C|1403, 7PJW|1|a|A|1503

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7PJW|1|a|C|1399
7PJW|1|a|C|1400
7PJW|1|a|G|1401
7PJW|1|a|4OC|1402
7PJW|1|a|C|1403
7PJW|1|a|C|1404
*
7PJW|1|a|G|1497
7PJW|1|a|UR3|1498
7PJW|1|a|A|1499
7PJW|1|a|A|1500
7PJW|1|a|C|1501
7PJW|1|a|A|1502
7PJW|1|a|A|1503
7PJW|1|a|G|1504

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12

Chain v

Transfer RNA; tRNA

Chain z

mRNA