IL_7PJX_009

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4501

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7PJX|1|A|C|274
7PJX|1|A|C|275
7PJX|1|A|U|276
7PJX|1|A|G|277
7PJX|1|A|A|278
7PJX|1|A|A|279
7PJX|1|A|U|280
7PJX|1|A|C|281
*
7PJX|1|A|G|359
7PJX|1|A|U|360
7PJX|1|A|G|361
7PJX|1|A|A|362
7PJX|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains