IL_7PJX_062

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7PJX|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_062 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0809

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7PJX|1|A|C|1686
7PJX|1|A|G|1687
7PJX|1|A|U|1688
7PJX|1|A|A|1689
7PJX|1|A|A|1690
7PJX|1|A|C|1691
*
7PJX|1|A|G|1696
7PJX|1|A|G|1697
7PJX|1|A|A|1698
7PJX|1|A|G|1699
7PJX|1|A|A|1700
7PJX|1|A|A|1701
7PJX|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA