IL_7PJX_081

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

GAGCCU*AUGUUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_081 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3352

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

7PJX|1|A|G|2100
7PJX|1|A|A|2101
7PJX|1|A|G|2102
7PJX|1|A|C|2103
7PJX|1|A|C|2104
7PJX|1|A|U|2105
*
7PJX|1|A|A|2184
7PJX|1|A|U|2185
7PJX|1|A|G|2186
7PJX|1|A|U|2187
7PJX|1|A|U|2188
7PJX|1|A|U|2189

Current chains

Chain A

23S ribosomal RNA

Nearby chains