IL_7PJX_129

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_129 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0985

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7PJX|1|a|U|409
7PJX|1|a|G|410
7PJX|1|a|A|411
7PJX|1|a|A|412
7PJX|1|a|G|413
7PJX|1|a|A|414
7PJX|1|a|A|415
7PJX|1|a|G|416
*
7PJX|1|a|U|427
7PJX|1|a|G|428
7PJX|1|a|U|429
7PJX|1|a|A|430
7PJX|1|a|A|431
7PJX|1|a|A|432
7PJX|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4