IL_7PJX_176

3D structure

PDB id

7PJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.5 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

7PJX|1|A|U|846, 7PJX|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJX_176 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3632

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

7PJX|1|A|A|844
7PJX|1|A|A|845
7PJX|1|A|U|846
7PJX|1|A|U|847
7PJX|1|A|C|848
*
7PJX|1|A|G|930
7PJX|1|A|U|931
7PJX|1|A|U|932
7PJX|1|A|A|933
7PJX|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30