IL_7PJY_034

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7PJY|1|A|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJY_034 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.1482

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7PJY|1|A|G|1011
7PJY|1|A|U|1012
7PJY|1|A|C|1013
*
7PJY|1|A|G|1149
7PJY|1|A|C|1150

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20