IL_7PJY_041

3D structure

PDB id

7PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

7PJY|1|A|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PJY_041 not in the Motif Atlas

Homologous match to IL_4WF9_044

Geometric discrepancy: 0.1179

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

7PJY|1|A|C|1196
7PJY|1|A|G|1197
7PJY|1|A|U|1198
*
7PJY|1|A|A|1247
7PJY|1|A|G|1248
7PJY|1|A|U|1249
7PJY|1|A|G|1250

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20