3D structure

PDB id
7PJY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
7PJY|1|A|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7PJY_063 not in the Motif Atlas
Geometric match to IL_5J7L_308
Geometric discrepancy: 0.0835
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

7PJY|1|A|C|1686
7PJY|1|A|G|1687
7PJY|1|A|U|1688
7PJY|1|A|A|1689
7PJY|1|A|A|1690
7PJY|1|A|C|1691
*
7PJY|1|A|G|1696
7PJY|1|A|G|1697
7PJY|1|A|A|1698
7PJY|1|A|G|1699
7PJY|1|A|A|1700
7PJY|1|A|A|1701
7PJY|1|A|G|1702

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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