IL_7PKQ_009

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

7PKQ|1|2|U|176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_009 not in the Motif Atlas

Geometric match to IL_4LFB_014

Geometric discrepancy: 0.1644

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

7PKQ|1|2|U|175
7PKQ|1|2|U|176
7PKQ|1|2|G|177
*
7PKQ|1|2|C|201
7PKQ|1|2|A|202

Current chains

Chain 2

S2 rRNA

Nearby chains

Chain 1

S1 rRNA

Chain C

mS45