IL_7PKQ_010

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

ACAAU*AU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_010 not in the Motif Atlas

Geometric match to IL_4LFB_015

Geometric discrepancy: 0.2166

The information below is about IL_4LFB_015

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

7PKQ|1|2|A|179
7PKQ|1|2|C|180
7PKQ|1|2|A|181
7PKQ|1|2|A|182
7PKQ|1|2|U|183
*
7PKQ|1|2|A|198
7PKQ|1|2|U|199

Current chains

Chain 2

S2 rRNA

Nearby chains

Chain 1

S1 rRNA

Chain C

mS45

Chain p

bS16m