IL_7PKQ_014
3D structure
- PDB id
- 7PKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Small subunit of the Chlamydomonas reinhardtii mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGGCAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7PKQ_014 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.3749
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
7PKQ|1|3|C|81
7PKQ|1|3|A|82
7PKQ|1|3|G|83
7PKQ|1|3|G|84
7PKQ|1|3|C|85
7PKQ|1|3|A|86
7PKQ|1|3|G|87
*
7PKQ|1|3|C|295
7PKQ|1|3|G|296
Current chains
- Chain 3
- S3 rRNA
Nearby chains
- Chain 1
- S1 rRNA
- Chain 4
- Small subunit ribosomal RNA; SSU rRNA
- Chain e
- S5 DRBM domain-containing protein
- Chain h
- uS8m
- Chain l
- uS12m
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