IL_7PKQ_023

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_023 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.3364

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7PKQ|1|3|C|231
7PKQ|1|3|G|232
7PKQ|1|3|A|233
7PKQ|1|3|A|234
7PKQ|1|3|C|235
*
7PKQ|1|3|G|251
7PKQ|1|3|G|252
7PKQ|1|3|U|253
7PKQ|1|3|A|254
7PKQ|1|3|G|255

Current chains

Chain 3

S3 rRNA

Nearby chains

Chain 4

Small subunit ribosomal RNA; SSU rRNA