IL_7PKQ_026

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

7PKQ|1|4|A|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_026 not in the Motif Atlas

Homologous match to IL_5J7L_039

Geometric discrepancy: 0.2836

The information below is about IL_5J7L_039

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7PKQ|1|3|G|336
7PKQ|1|3|G|337
*
7PKQ|1|4|C|304
7PKQ|1|4|A|305
7PKQ|1|4|C|306

Current chains

Chain 3

S3 rRNA

Chain 4

S4 rRNA

Nearby chains

Chain 1

S1 rRNA

Chain e

S5 DRBM domain-containing protein