IL_7PKQ_028

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_028 not in the Motif Atlas

Geometric match to IL_5TBW_044

Geometric discrepancy: 0.2278

The information below is about IL_5TBW_044

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7PKQ|1|3|G|342
7PKQ|1|3|A|343
7PKQ|1|3|U|344
*
7PKQ|1|4|A|298
7PKQ|1|4|U|299
7PKQ|1|4|U|300

Current chains

Chain 3

S3 rRNA

Chain 4

S4 rRNA

Nearby chains

Chain e

S5 DRBM domain-containing protein