IL_7PKQ_035

3D structure

PDB id

7PKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Small subunit of the Chlamydomonas reinhardtii mitoribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AAA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAA,UUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7PKQ_035 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.1921

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7PKQ|1|4|A|183
7PKQ|1|4|A|184
7PKQ|1|4|A|185
*
7PKQ|1|4|U|217
7PKQ|1|4|U|218
7PKQ|1|4|U|219

Current chains

Chain 4

S4 rRNA

Nearby chains

Chain x

mS29

Chain y

mS33